class Bio::SequenceDB

• Bio::SequenceDB
• Reference
• Object

Overview

Sequence DB

A class representing a collection of Sequence objects (i.e. a fasta file).

TODO Method that allow searching sequences based on certain descriptor.

Direct Known Subclasses

• Bio::Fasta

Defined in:

sequence/sequence.cr

Constructors

• .new(descriptor_names : Nil | Array(String) = nil, sequence_type : Bio::SequenceType = Bio::SequenceType::Undefined)

Instance Method Summary

• #data : Hash(String, Sequence)
• #data=(data : Hash(String, Sequence))
• #descriptor_names : Array(String) | Nil
• #record(id : String)
• #records
• #sequence_type : SequenceType
• #to_fasta_str

Constructor Detail

Instance Method Detail