class Bio::Blast

• Bio::Blast
• Reference
• Object

Overview

Blast class

Class of abstract methods to be called to execute and wrap blast results. Needs blast installed within the system.

Defined in:

align/blast.cr

Class Method Summary

• .run_local(db : SequenceDB, seq : Sequence)

  Run blast with a query Sequence against a local SequenceDB ---- TODO: check ncbi-blast+ package is installed or raise error FIXME: given tempfiles naming convention this method is implemented on real files.

• .run_ncbi(db : Blast::DB, seq : Sequence)

  Run blast with a query Sequence against an online database.

Class Method Detail