struct Chem::ChainView

Included Modules

Defined in:

chem/core/chain_view.cr

Instance Method Summary

Instance methods inherited from module Indexable(Chem::Chain)

[](idxs : Tuple) : Tuple
[](idxs : Enumerable(Int)) : Array(T)
[](*idxs : Int) : Tuple
[]
, sentence(io : IO, separator : String = ", ", *, pair_separator : String = " and ", tail_separator : String = ", and ", & : T, IO -> ) : Nil
sentence(io : IO, separator : String = ", ", *, pair_separator : String = " and ", tail_separator : String = ", and ") : Nil
sentence(separator : String = ", ", *, pair_separator : String = " and ", tail_separator : String = ", and ", & : T -> ) : String
sentence(separator : String = ", ", *, pair_separator : String = " and ", tail_separator : String = ", and ") : String
sentence
, to_dcd(io : IO, title : String | Nil = nil) : Nil
to_dcd(title : String | Nil = nil) : String
to_dcd(path : Path | String, title : String | Nil = nil) : Nil
to_dcd

Instance methods inherited from module Enumerable(Chem::Chain)

===(atom : Chem::Atom) : Bool
===(chain : Chem::Chain) : Bool
===(residue : Chem::Residue) : Bool
===
, average(weights : Indexable(Number))
average(weights : Indexable(Number), & : T -> _)
average
, find(pattern, if_none default = nil) find, find!(pattern) find!, mean
mean(& : T -> _)
mean
, to_dcd(io : IO, title : String | Nil = nil) : Nil
to_dcd(title : String | Nil = nil) : String
to_dcd(path : Path | String, title : String | Nil = nil) : Nil
to_dcd
, to_mol2(io : IO) : Nil
to_mol2(path : Path | String) : Nil
to_mol2 : String
to_mol2
, to_pdb(io : IO, conect conect_options : PDB::ConectOptions = PDB::ConectOptions.flags(Het, Disulfide), renumber : Bool = true, ter_on_fragment : Bool = false) : Nil
to_pdb(conect conect_options : PDB::ConectOptions = PDB::ConectOptions.flags(Het, Disulfide), renumber : Bool = true, ter_on_fragment : Bool = false) : String
to_pdb(path : Path | String, conect conect_options : PDB::ConectOptions = PDB::ConectOptions.flags(Het, Disulfide), renumber : Bool = true, ter_on_fragment : Bool = false) : Nil
to_pdb
, to_sdf(io : IO, variant : Mol::Variant = :v2000) : Nil
to_sdf(path : Path | String, variant : Mol::Variant = :v2000) : Nil
to_sdf(variant : Mol::Variant = :v2000) : String
to_sdf
, to_xyz(io : IO, extended : Bool = false, fields : Array(String) = [] of String) : Nil
to_xyz(extended : Bool = false, fields : Array(String) = [] of String) : String
to_xyz(path : Path | String, extended : Bool = false, fields : Array(String) = [] of String) : Nil
to_xyz

Instance Method Detail

def atoms : AtomView #

[View source]
def residues : ResidueView #

[View source]