class Chem::Chain

• Chem::Chain
• Reference
• Object

Included Modules

• Comparable(Chem::Chain)

Defined in:

Constructors

• .new(structure : Structure, id : Char)

Class Method Summary

• .succ_id(id : Char | Nil = nil) : Char

  Returns the next alphanumeric chain identifier after id.

Instance Method Summary

• #<=>(rhs : self) : Int32

  The comparison operator.

• #[](number : Int32, insertion_code : Char | Nil = nil) : Residue
• #[]?(number : Int32, insertion_code : Char | Nil = nil) : Residue | Nil
• #atoms : AtomView
• #clear : self
• #delete(residue : Residue) : Residue | Nil
• #delete : Nil
• #dig(number : Int32, insertion_code : Char | Nil) : Residue
• #dig(number : Int32, insertion_code : Char | Nil, *subindexes)
• #dig(number : Int32) : Residue
• #dig(number : Int32, *subindexes)
• #dig?(number : Int32, insertion_code : Char | Nil) : Residue | Nil
• #dig?(number : Int32, insertion_code : Char | Nil, *subindexes)
• #dig?(number : Int32) : Residue | Nil
• #dig?(number : Int32, *subindexes)
• #id : Char
• #inspect(io : IO) : Nil

  Appends a String representation of this object which includes its class name, its object address and the values of all instance variables.

• #matches?(id : Char) : Bool

  Returns true if the chain id equals the given character, else false.

• #matches?(ids : Enumerable(Char)) : Bool

  Returns true if the chain id is included in the given characters, else false.

• #polymer? : Bool
• #renumber_residues_by(& : Residue -> _) : Nil

  Renumber residues based on the order by the output value of the block.

• #renumber_residues_by_connectivity : Nil

  Renumber residues based on bond information.

• #residues : ResidueView
• #spec(io : IO) : Nil

  Writes the chain specification to the given IO.

• #spec : String

  Returns the chain specification.

• #structure : Structure
• #structure(*args, **options)

  TODO remove this nonsensical line

• #structure(*args, **options, &)

  TODO remove this nonsensical line

• #succ_id : Char

  Returns the next alphanumeric chain identifier after this chain.

• #to_s(io : IO)

  Appends a short String representation of this object which includes its class name and its object address.

Constructor Detail

Class Method Detail

Chain.succ_id      # => 'A'
Chain.succ_id('A') # => 'B'
Chain.succ_id('Z') # => 'a'
Chain.succ_id('z') # => '0'

Instance Method Detail

chains = Structure.read("peptide.pdb").chains

chains[0] <=> chains[1] # => -1
chains[1] <=> chains[1] # => 0
chains[2] <=> chains[1] # => 1

class Person
  def initialize(@name : String, @age : Int32)
  end
end

Person.new("John", 32).inspect # => #<Person:0x10fd31f20 @name="John", @age=32>

class Person
  def initialize(@name : String, @age : Int32)
  end
end

Person.new("John", 32).to_s # => #<Person:0x10a199f20>